Package: GSAQ 1.0

GSAQ: Gene Set Analysis with QTL

Computation of Quantitative Trait Loci hits in the selected gene set. Performing gene set validation with Quantitative Trait Loci information. Performing gene set enrichment analysis with available Quantitative Trait Loci data and computation of statistical significance value from gene set analysis. Obtaining the list of Quantitative Trait Loci hit genes along with their overlapped Quantitative Trait Loci names.

Authors:Samarendra Das <[email protected]>

GSAQ_1.0.tar.gz
GSAQ_1.0.zip(r-4.5)GSAQ_1.0.zip(r-4.4)GSAQ_1.0.zip(r-4.3)
GSAQ_1.0.tgz(r-4.5-any)GSAQ_1.0.tgz(r-4.4-any)GSAQ_1.0.tgz(r-4.3-any)
GSAQ_1.0.tar.gz(r-4.5-noble)GSAQ_1.0.tar.gz(r-4.4-noble)
GSAQ_1.0.tgz(r-4.4-emscripten)GSAQ_1.0.tgz(r-4.3-emscripten)
GSAQ.pdf |GSAQ.html✨
GSAQ/json (API)

# Install 'GSAQ' in R:
install.packages('GSAQ', repos = c('https://sam-dfmd.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • genelist - A list of genes of rice
  • qtl_salt - A list of salt responsive Quantitative Trait Loci of rice
  • rice_salt - Gene expression data of rice under salinity stress

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.34 score 11 scripts 128 downloads 2 mentions 8 exports 0 dependencies

Last updated 9 years agofrom:e868d661a9. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 03 2025
R-4.5-winOKMar 03 2025
R-4.5-macOKMar 03 2025
R-4.5-linuxOKMar 03 2025
R-4.4-winOKMar 03 2025
R-4.4-macOKMar 03 2025
R-4.3-winOKMar 03 2025
R-4.3-macOKMar 03 2025

Exports:genedistgeneqtlGeneSelectGSAQGSVQqtldistqtlhittotqtlhit

Dependencies: